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[http://www.fil.ion.ucl.ac.uk SPM] is by far the most widely used package for analysis of FMRI.  [[http://www.fil.ion.ucl.ac.ukSPM]] is by far the most widely used package for analysis of FMRI. 
Statistical Parametric Mapping software (SPM)
SPM is by far the most widely used package for analysis of FMRI.
It is opensource under the GPL license, and is written in Matlab.